convertΒΆ

converts tractogram file formats


Usage

./trekker convert [OPTIONS] <input tractogram> <output tractogram>

Positionals

  • <input tractogram> TEXT:FILE REQUIRED Input tractogram (.vtk, .tck, .trk)

  • <output tractogram> TEXT REQUIRED Output tractogram (.vtk, .tck)


Options

Option Description
-r, --reference TEXT:FILE Image to use as reference space (needed for converting .vtk/.tck to .trk, and vice versa).
-a, --ascii Write ASCII output. Only available when the output is .vtk.

General options

Option Description
-h, --help Print this help message and exit.
-n, --numberOfThreads INT Number of threads.
-v, --verbose TEXT Verbose level. Options are "quiet", "fatal", "error", "warn", "info", and "debug". Default=info.
-f, --force Force overwriting of existing file.