track2surfΒΆ
maps tractogram features on a surface
Usage
./trekker track2surf [OPTIONS] <input tractogram> <input surface mesh> <output surface mesh> <field name>
Positionals
<input tractogram> TEXT:FILE REQUIRED Input tractogram (.vtk, .tck)
<input surface mesh> TEXT:FILE REQUIRED Input surface mesh (.vtk, .gii)
<output surface mesh> TEXT REQUIRED Output surface mesh (.vtk)
<field name> TEXT REQUIRED Field name to use when writing the feature on the surface mesh
Options
| Option | Description |
|---|---|
| --feature TEXT REQUIRED | Name of output feature. Options are: "streamlineDensity", "streamlineCount", "contactAngle" and "contactDirection". |
General options
| Option | Description |
|---|---|
| -h, --help | Print this help message and exit. |
| -n, --numberOfThreads INT | Number of threads. |
| -v, --verbose TEXT | Verbose level. Options are "quiet", "fatal", "error", "warn", "info", and "debug". Default=info. |
| -f, --force | Force overwriting of existing file. |
