transform¶
transform tractogram
Usage
./trekker transform [OPTIONS] <input tractogram> <transform> <output tractogram>
Positionals
<input tractogram> TEXT:FILE REQUIRED Input tractogram (.vtk, .tck)
<transform> TEXT:FILE REQUIRED 4x4 transform matrix (.mat, .txt). (.mat is ANTs’ format.)
<output tractogram> TEXT REQUIRED Output tractogram (.vtk, .tck)
Options
| Option | Description |
|---|---|
| -i, --invert | Apply inverse of the transform. |
General options
| Option | Description |
|---|---|
| -h, --help | Print this help message and exit. |
| -n, --numberOfThreads INT | Number of threads. |
| -v, --verbose TEXT | Verbose level. Options are "quiet", "fatal", "error", "warn", "info", and "debug". Default=info. |
| -f, --force | Force overwriting of existing file. |
