img2trackΒΆ
maps image values on a tractogram
Usage
./trekker img2track [OPTIONS] <input image> <input tractogram> <output file name>
Positionals
<input image> TEXT:FILE REQUIRED Input image (.nii, .nii.gz)
<input tractogram> TEXT:FILE REQUIRED Input tractogram (.vtk, .tck)
<output file name> TEXT REQUIRED Output file name. Output is a float32 type binary file.
Options
| Option | Description |
|---|---|
| --SH | Treat the image as a 4D spherical harmonics image. |
| --SF | Treat the image as a 4D spherical function image. |
| --SF_smoothing FLOAT | Apply spherical smoothing before using the spherical function. |
General options
| Option | Description |
|---|---|
| -h, --help | Print this help message and exit. |
| -n, --numberOfThreads INT | Number of threads. |
| -v, --verbose TEXT | Verbose level. Options are "quiet", "fatal", "error", "warn", "info", and "debug". Default=info. |
| -f, --force | Force overwriting of existing file. |
