selectΒΆ
selects streamlines from a tractogram
Usage
./trekker select [OPTIONS] <input tractogram> <output tractogram>
Positionals
<input tractogram> TEXT:FILE REQUIRED Input tractogram (.vtk, .tck, .trk)
<output tractogram> TEXT REQUIRED Output tractogram (.vtk, .tck, .trk)
Options
| Option | Description |
|---|---|
| -s, --selection TEXT | File with binary values that mark selected streamlines with 1 and others with 0. |
| -r, --random INT | Random tractogram file creating. One input required, total count for random lines. |
| -o, --ordered INT x 2 | Ordered tractogram file creating. Two inputs required, begin and end index. |
General options
| Option | Description |
|---|---|
| -h, --help | Print this help message and exit. |
| -n, --numberOfThreads INT | Number of threads. |
| -v, --verbose TEXT | Verbose level. Options are "quiet", "fatal", "error", "warn", "info", and "debug". Default=info. |
| -f, --force | Force overwriting of existing file. |
